University of Oklahoma, Department of Chemistry and Biochemistry

• Adkins, Harvey J., 1982. "An Investigation of the Interaction of Aminoacyl-Transfer RNA with Elongation Factor Tu Using Site-Specific Fluorescent Probes."
• Abrahamson, Julie K., 1984. "An Investigation of Protein-Nucleic Acid Interactions: The Affinity of Aminoacyl-Transfer RNA for Elongation Factor Tu."
• Isaacs, Benjamin S., 1985. "Structural Aspects of Blood Coagulation Proteins and Their Complexes: A Fluorescence Spectroscopic Study."
• Dell, Virginia Ann, 1987. "Elongation Factor Conformation: Its Effect on the Aminoacyl-tRNAlElongation FactorlGTP Ternary Complex as Detected Using a Fluorescent-Labeled Transfer RNA."
• Husten, E. Jean, 1988. "The Molecular Architecture of Membrane-Bound Enzyme-Cofactor Complexes Involved in Blood Coagulation."
• Krieg, Ute C., 1989. "Photocrosslinking Studies of the Environment of Nascent Polypeptides During Protein Synthesis and Secretion."
• Janiak, Fabiola, 1991. "Assembly of the Signal Recognition Particle: A Study of Its Protein-Nucleic Acid and Protein-Protein Interactions Using Fluorescence Spectroscopy."
• Shore, Steven K., 1991."The Use of Fluorescent-labeled Amino Acids to Examine the Environment of Ribosome-bound Nascent Polypeptide Chains."
• Ye, Jia, 1992. "Structure-Function Relationships of the Anticoagulant Thrombin-Thrombomodulin Complex."
• Crowley, Kathleen S., 1993. "The Secretory Protein Pathway within the Ribosome and through the Membrane of the Endoplasmic Reticulum."
• Mutucumarana, Vasantha P., 1993. "The Active Site of Membrane-bound Blood Coagulation Factor IXa: Its Location above the Membrane Surface and its Conformational Sensitivity to the Factor VIIIa Cofactor."
• Dharmawardana, Kumudini, 1994. "The Sensitivity of the Active Site Conformation and Topography of Membrane-bound Factor Xa to Individual Factor Va Subunits and to Cofactor Inactivation."

Texas A&M University

• Do, Hung V., 1997. "Photocrosslinking Studies of the Co-translational Integration of Nascent Membrane Proteins into the Endoplasmic Reticulum Membrane." Ph. D. in Medical Sciences.
• Liao, Shuren, 1997. "A Fluorescence Examination of Nascent Polypeptide Environment and the Ribosome-Membrane Junction during Co-translational Protein Translocation and Integration at the ER Membrane." Ph. D. in Medical Sciences.
• Yegneswaran, Subramanian, 1997. "The Molecular Architecture of the Anticoagulant Membrane-Bound Activated Protein C Enzyme and Its Dependence on the Cofactor Protein S and Phospholipid Composition." Ph. D. in Medical Sciences.
• Chen, Jui-Chang, 1997. "Signal Recognition Particle Interactions with the Signal Sequence, Nascent Chains, Ribosomes, and GTP/GDP." Ph. D. in Medical Sciences.
• Flanagan, John, 2003. "Detecting Macromolecular Associations By Fluorescence Spectroscopy." Ph.D. in Biochemistry and Biophysics.
• Etchells, Stephanie, 2003. "Examination of Eukaryotic Chaperonin-Mediated Nascent Chain Folding in the Cytosol: A Photocrosslinking Approach." Ph.D. in Biochemistry and Biophysics.
• McCormick, Peter, 2003. "Investigating Cotranslational Protein Integration into the Endoplasmic Reticulum Membrane." Ph.D. in Biochemistry and Biophysics.
• Ramachandran, Rajesh, 2004. "Structural Insights into the Mechanisms of Membrane Binding and Oligomerization of a Bacterial Pore-Forming Toxin." Ph.D. in Biochemistry and Biophysics.
• Wahlman, Judit 2007.  "Fluorescent-detected Retrotranslocation of an Endoplasmic Reticulum-Associated (ERAD) Substrate in a Mammalian In Vitro System." Ph.D. in Biochemistry and Biophysics
• Jongsma, Candice G., 2008. “Investigating Cotranslational Integration of a Multi-Spanning Membrane Protein into the Endoplasmic Reticulum Membrane.”  Ph.D. in Chemistry.

M.S. Theses Directed by Dr. Johnson

University of Oklahoma

• Krieg, Ute C., 1984. "An Examination of the Interaction of Blood Coagulation Factor Va with Phospholipid Vesicles Using Lipophilic Photoreagents."
• Janiak, Fabiola, 1985. "Fluorescence-Detected Interactions of Various Aminoacyl-tRNAs with Escherichia coli Elongation Factor Tu."
• Tober, Carsten, 1992. "Photocrosslinking Studies of the Environment of the Stop-Transfer Sequence of Transmembrane Proteins during Integration."

Texas A&M University

• Su, Bixia, 1998. "Tissue Factor Positions and Maintains the Factor VIIa Active Site Far Above the Membrane Surface Even in the Absence of the Factor VIIa Gla Domain." M.S. in Chemistry.
• Cargill, Holly B., 2006. "Assaying Protein Import into Mitochondria using Fluorescence Spectroscopy." M.S. in Biochemistry and Biophysics.